SIMONA citation and related publications

How to cite SIMONA

Please, in case you use SIMONA use the follwing cite:

Strunk, T., Wolf, M., Brieg, M., Klenin, K., Biewer, A., Tristram, F., … & Wenzel, W. (2012). SIMONA 1.0: An efficient and versatile framework for stochastic simulations of molecular and nanoscale systems. Journal of computational chemistry, 33(32), 2602-2613.

or use the following BibTex code:

@article{strunk2012simona,title={SIMONA 1.0: An efficient and versatile framework for stochastic simulations of molecular and nanoscale systems},
author={Strunk, Timo and Wolf, Moritz and Brieg, Martin and Klenin, K and Biewer, A and Tristram, Frank and Ernst, M and Kleine, PJ and Heilmann, N and Kondov, Ivan and others},
journal={Journal of computational chemistry},
volume={33}, number={32},
pages={2602--2613}, year={2012},
publisher={Wiley Online Library}}

SIMONA publications

Recent publications using SIMONA

1. (2022). Modelling peptide adsorption energies on gold surfaces with an effective implicit solvent and surface model

2. (2021). Monte-Carlo Simulations of Soft Matter using SIMONA: A review of recent applications

3. (2020). Sampling of the conformational landscape of small proteins with Monte Carlo methods

4. (2020). Tacticity dependence of single chain polymer folding

5. (2019). Rational Design of Iron Oxide Binding Peptide Tags

6. (2015). Modelling of reversible single chain polymer self-assembly: from the polymer towards the protein limit

7. (2012). SIMONA 1.0: An efficient and versatile framework for stochastic simulations of molecular and nanoscale systems

Algorithm publications implemented in SIMONA

1. PowerBorn

2. PowerSASA

3. AroMoCa